Firstly, as
@Ianno87 says, the length of 6 track is only New Malden to Wimbledon, compared to the 5th track which was Surbiton to Nine Elms.
Secondly, line diagrams don’t help explain the level of disruption. For 5 tracks there would need to be extensive slueing of all the tracks at various locations to keep it within (roughly) the existing boundary. But there’s also extensive Civils works needed at Wimbledon (Durnsford Rd flyover is rebuilt), Earlsfield, and through the cutting south of Clapham. Extraordinarily disruptive locally, and to the train service. In comparison, tracks 5 and 6 are ‘simply’ built either side of the formation, and largely done separate from the existing railway. Clearly there is some work to tie it in, and Raynes Park is a big job, but all that can be done under cover of the disruption needed to rebuild Wimbledon for Crossrail 2.
Thirdly, the 5th track work was very cursory, and there was no construction methodology done (there never is at that stage of development). It is easy to sssume that you can fit extra tracks in the boundary fence where there is space, but actually building the thing needs more space. Lots more space.