On the Southeastern network:
From Charing Cross
2R06 0530 London Charing Cross to Ramsgate calls at Orpington, Chelsfield and Hildenborough, rare stops for Ramsgate trains.
2N06 0556 London Charing Cross to Gillingham (Kent) and
2N08 0626 London Charing Cross to Strood call at all stations to Gillingham via Sidcup (except St Johns).
2S92 0748 London Charing Cross to Orpington is fast from London Bridge to Orpington only.
2R90 0752 London Charing Cross to Tonbridge is fast from London Bridge to Tonbridge only.
2R20 0853 London Charing Cross to Ashford International is fast from London Bridge to Tonbridge, then fast again to Ashford (the only train of the day fast on the Ashford-Tonbridge line).
1M90 1730 London Charing Cross to Dartford and
1M92 1752 London Charing Cross to Dartford run fast from Waterloo East to Blackheath.
2L80 2239,
2L82 2309 and
2L84 2339 to Gillingham call additionally at Stone Crossing, Swanscombe and Northfleet.
2Y86 0015 London Charing Cross to Tonbridge runs non stop from London Bridge to Orpington (avoiding Lewisham via New Beckenham) then all stations except Knockholt to Sevenoaks.
To Charing Cross
2D04 0434 Gillingham (Kent) to London Charing Cross calls all stations via Sidcup to Charing Cross (except St Johns).
1D52 0712 Gillingham (Kent) to London Charing Cross calls all stations to New Eltham, then fast to London Bridge.
1C90 0738 Barnehurst to London Charing Cross and
1C92 0758 Barnehurst to London Charing Cross run fast from Blackheath to Waterloo East.
2Y92 1612 Beckenham Junction to London Charing Cross calls at normal Hayes-Charing Cross stops but starts at Beckenham Junction instead of Hayes.
From Cannon Street
2Y91 0903 London Cannon Street to Beckenham Junction runs fast from London Bridge to Ladywell via Lewisham then all stations to Beckenham Junction via the New Beckenham spur.
1G93 1814 London Cannon Street to Ramsgate run fast from London Bridge to Chatham.
To Cannon Street
2A91 0607 Gillingham (Kent) to London Cannon Street doesn't call at Charlton.
1G91 0625 Broadstairs to London Cannon Street and
1G93 0648 Broadstairs to London Cannon Street are fast from Chatham to London Bridge.
2C63 1810 Barnehurst to London Cannon Street doesn't call at Blackheath.
From Victoria
2B96 0530 London Victoria to Bromley South calls at Wandsworth Road, Clapham High Street, Denmark Hill, Peckham Rye and is then fast to Bromley South.
2U08 0709 London Victoria to Dartford calls only at Lewisham, Blackheath and Barnehurst en-route.
2U12 0743 London Victoria to Dartford calls usual stops to Blackheath, then fast to Dartford.
1S88 0010 London Victoria to Ramsgate runs fast from Victoria to Rochester then all stations to Ramsgate.
2S88 0037 London Victoria to Gillingham (Kent) calls at Herne Hill, Penge East and Beckenham Junction but not Sole Street.
To Victoria
2A02 0433 Swanley to London Victoria calls at all stations to Victoria via Beckenham Junction.
1P06 0540,
1P08 0609 and
1P10 0632 from Ramsgate all run fast from Chatham to Bromley South.
2B90 1818 Sevenoaks to London Victoria calls at all stations to St Mary Cray, then Bromley South, Denmark Hill, Clapham High Street, Wandsworth Road and Victoria.
From St Pancras
1F50 1725,
1F52 1755 and
1F54 1825 to Broadstairs run fast from Ebbsfleet to Rochester.
1J50 1712 St Pancras International to Dover Priory,
1J52 1742 St Pancras International to Sandwich,
1J54 1812 St Pancras International to Margate and
1J56 1842 St Pancras International to Sandwich do not call at Ebbsfleet.
To St Pancras
1F11 0600,
1F13 0630 and
1F15 0700 from Broadstairs all run fast from Rochester to Ebbsfleet.
1J09 0548 Margate to St Pancras International,
1J11 0626 Ramsgate to St Pancras International,
1J13 0646 Margate to St Pancras International and
1J15 0730 Ramsgate to St Pancras International do not call at Ebbsfleet.
I'm sure there are others and if I find any, I'll add them. There are some which are unusual but happen too many times a day to mention (e.g. peak Hastings services which run fast from High Brooms to London Bridge in each direction).
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