I don't think you would need it for Stage 1 because all would leave HS2 at Handsacre Jn so three paths remain, arguably for Stage 2A would you have two trains to Crewe for Manchester and one off at Handsacre for Stoke etc or would stay with the balance as today with two trains off at Handsacre.
But this issue doesn't arise with Phase 1 or 2A I think because the benefit is mainly south of Birmingham (1) or Crewe (2A) albeit it a faster journey of course for those using HS2 and travelling beyond it to Manchester, Liverpool, Glasgow etc.
As far as Stage 2B surely there are paths between Stoke / Macclesfield and Manchester via Stockport because most of the trains for Manchester from London that run today would run on Stage 2B and not touch these areas thus releasing capacity to allow at least 1tph?