The layout is designed so that the Sussex Reversible is a continuation of the Up Sussex Slow - the last signal on the Up Sussex Slow is 4016, and the next ones on the Sussex Reversible are 4014, 4012, 4010, 4008. Thus trains coming off the Up Sussex Fast have to 'cross' to get to the Sussex Reversible regardless.
The choice of whether to do this at 4444 (the last signal on the Up Sussex Fast before it heads off to do Thameslink related things), or from 4446 (the signal before it, at New Cross Gate) makes very little difference to the train itself and will be down to the signaller.
Trains had been almost always going across at 4446 until the diveunder came into use because trains going from 4444 to the Sussex/Bermondsey Reversibles cannot do so at the same time that a down train is coming from either of these lines towards New Cross Gate.
Until Thameslink takes some traffic away from the Low Level station, the signallers will still be occasionally routing down trains via the Sussex/Bermondsey Reversibles and there is no reason for them not to do this. This means it will sometimes be useful to move over up fast trains at 4446. However, sending trains via 4444 means you can keep both the Up Slow and Up Fast moving without using the Up Sussex Loop. I guess both routes will be used for the foreseeable future!
Hope this helps - there's a live signalling diagram here:
http://www.opentraintimes.com/maps/signalling/tl-lbg-1 for anyone interested, although note that the signalling route from 4016 to 4014 currently incorrectly shows as to 4132. I've also attached a diagram with line names on, which is probably not totally inaccurate.