I've always been surprised that Liverpool-Warrington-Manchester has not been identified for electrification. Is there something particularly obvious that stops this route from being a preferred option.
I think the thing that many have grasped but some have not is that services can be changed and this does not necessarily mean truncation or separation. Alternative routes can be put in place to keep efficiencies.
I think one of the many benefits of the short electrification of the line from Bolton to Wigan is that it provides a short turn back destination for the Bolton line, without it being Bolton. Wigan will have the benefit of fast trains via Newton Le Willows, Southport's via Atherton, and trains via Bolton. I assume the Bolton route will be the slowest of the three, so it is not going to be as desirable for them but it means that additional services can be concentrated around Bolton to Manchester without taking additional capacity.
I assume that DfT are looking at North Wales entrance routes to keep ahead of the WAG's desire to electrify the Holyhead route. It would be embarrasing to be caught on the hop.
Talking of Barrow, what is the plan for their Diesel services in the short/medium term. Is it likely that they will drop away from the Bolton route as soon as the wires go in, to keep them away from a busy route.
There is a desire (although how much there still is now is not something I know), to run East Coast Leeds services via Hambleton.
The London - Leeds - London services is just short of 4.5 hours and would allow East Coast to step up sets rather than sit them at Leeds waiting for a path south. In addition, the route would allow East Coast to shorten the journey times to Skipton, Bradford and Harrogate by ripping out the termination (can you still speed up the Skipton - London time by hopping across to the preceding London bound service at Leeds?)