The rear unit of the train was in no more danger of being struck in the rear by a following train than any other train on that line. The wheels of the rear unit would have been detected by the track-circuit or axle-counter, and the signal behind the train would have been held at red.
There is nothing in the signalling system that prevents or holds a train that is split. Trains are often deliberately split, usually for the two halves to take different routes. Sometimes if a train fails, it may be decided to send the working front half on with the passengers, and leave the failed rear half behind.
Trains are displayed on the signalling panel or screen using a 4 digit train description, e.g. 1A23. When trying to contact a train, signallers will therefore usually use this code, not the unit number. There is a link between the train describer and the GSMR that allows the GSMR to correlate the train description number with the unit number when the driver initialises the train, or if the train description is changed. If the train splits, and the signaller tries to contact the train using its train description number, then he will get the unit that has been correlated with that train description (i.e. in this case, the front unit). I understand that signallers can contact trains by using the unit number, but of course they first have to find out what the unit number is.
If the rear unit was "dead" (lights out etc) then I very much doubt that the PA was switched on, so even if the signaller did try to contact the unit, I doubt that he would be able to make an announcement.
It does seem significant to me that the front unit experienced a "lights out" before departing. This suggests to me that something was reset, either automatically, perhaps as the result of a fault, or manually by the driver, for some reason.
I always understood that it was usual for locos to run with only one pantograph raised, because with both raised it could cause a standing wave in the overhead line between the two pantographs, that could causing arcing and damage the rear pantograph. Does this not also apply to multiple units, or is the pantograph separation great enough that it is not a problem?